High Performance Computing: 4th Latin American Conference, CARLA 2017, Buenos Aires, Argentina, and Colonia del Sacramento, Uruguay, September 20-22, 2017, Revised Selected Papers

435 Pages·2018·33.59 MB·English

by  Esteban Mocskos

Esteban Mocskos
Sergio Nesmachnow (Eds.)
Communications in Computer and Information Science 796
High Performance
Computing
4th Latin American Conference, CARLA 2017
Buenos Aires, Argentina, and
Colonia del Sacramento, Uruguay, September 20–22, 2017
Revised Selected Papers
123
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Esteban Mocskos Sergio Nesmachnow (Eds.)
(cid:129)
High Performance
Computing
4th Latin American Conference, CARLA 2017
Buenos Aires, Argentina, and
–
Colonia del Sacramento, Uruguay, September 20 22, 2017
Revised Selected Papers
123
Editors
Esteban Mocskos SergioNesmachnow
CSC-CONICETandUniversidaddeBuenos Universidad delaRepública
Aires Montevideo
BuenosAires Uruguay
Argentina
ISSN 1865-0929 ISSN 1865-0937 (electronic)
Communications in Computer andInformation Science
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Preface
CARLA2017
September20-22,2017
Colonia,Uruguay&Buenos
Aires,Argentina
High-performance computing (HPC) is a dynamic field that combines the use of
innovative computing technologies and algorithms with advances in a broad range of
scientific, technical, and industrial areas. Latin America shares the global enthusiasm
embracing and pushing forward HPC. New challenges coming from the use of the
computing capabilities of massive multicores, accelerators, cluster platforms, cloud
federations, and the new perspectives of Internet of Things resources all help to pro-
mote the research and innovation in this area.
Building onthesuccessofthepreviouseditionsofCARLA,theHigh-Performance
Computing Latin America Conference (and former HPCLATAM and CLCAR Con-
ferences), the tenth edition was organized in Buenos Aires and Colonia jointly by
UniversidaddeBuenosAires(Argentina)andUniversidaddelaRepública(Uruguay).
ThemaingoaloftheCARLAconferenceistoprovideaforumfosteringthegrowth
of the HPC community in Latin America, through the exchange and dissemination of
new ideas, techniques, and research in HPC. In 2017, CARLA featured invited talks
fromacademiaandindustry,full-papersessionspresentingmaturework,andnewideas
in research and industrial applications including: distributed systems, parallel algo-
rithmsandconcurrency;GPUandMICcomputing;mobile,grid,andcloudcomputing;
big data, data management, and visualization; scientific computing applications;
architecture, infrastructure, and HPC data center; HPC computing education and out-
reach; industrial solutions. Satellite events co-located with CARLA 2017 included the
meeting of the Cloud Computing for Smart-City Energy Management (CC-SEM
STIC-AmSud) Project, Red SCALAC (Servicios de Computación Avanzada para
LatinoaméricayelCaribe),andRICAPCYTED(RedIberoamericanadeComputación
de Altas Prestaciones). More than 100 researchers, students, technicians, practitioners,
and representatives of industry, technology, and state companies and organizations
(from more than 20 countries in Latin America, Europe, Asia, and Oceania) attended
the event.
Thisbook introduces thetopcontributions presented atCARLA2017,covering all
the aforementioned topics. As organizers, we think the articles are valuable contribu-
tions to the development of HPC in Latin America.
December 2017 Esteban Mocskos
Sergio Nesmachnow
Organization
Program Chairs
Gregoire Danoy University of Luxembourg, Luxembourg
Ricardo Medel Ascentio Technologies S.A., Argentina
Esteban Meneses Costa Rica National High Technology Center,
Costa Rica
Esteban Mocskos CSC-CONICET and Universidad de Buenos Aires,
Argentina
Sergio Nesmachnow Universidad de la República, Uruguay
Markus Rampp Max Planck Computing and Data Facility, Germany
Carlos Sarraute Grandata Labs, Argentina
Luiz Angelo Steffenel Université de Reims Champagne-Ardenne, France
Mariano Vazquez Barcelona Supercomputing Center, Spain
Program Committee
José Pedro Aguerre Universidad de la República, Uruguay
Hartwig Anzt Karlsruhe Institute of Technology, Germany
Carlos J. Barrios Universidad Industrial de Santander, Colombia
Leonardo Bautista Gomez Centro Nacional de Supercomputación, Spain
Carlos Bederián CONICET, Argentina
Pascal Bouvry University of Luxembourg, Luxembourg
Carlos Buil Universidad Técnica Federico Santa María, Chile
Harold Castro Universidad de los Andes, Colombia
Marcio Castro Federal University of Santa Catarina (UFSC), Brazil
Maria Clicia Stelling Universidade do Estado do Rio de Janeiro, Brazil
de Castro
Gerson Cavalheiro Universidade Federal de Pelotas, Brazil
Germán Ceballos Uppsala University, Sweden
Andrea Charão Universidad Federal Santa María, Brazil
Esteban Clua Universidade Federal Fluminense, Brazil
Flavio Colavecchia Centro Atómico Bariloche, Comisión Nacional
de Energía Atómica, Argentina
Daniel Cordeiro Universidade de São Paulo, Brazil
Carlos Couder-Castañeda Instituto Politecnico Nacional, Mexico
Alvaro Coutinho Federal University of Rio de Janeiro, Brazil
Adrián Cristal Barcelona Supercomputing Centre, Spain
Gregoire Danoy University of Luxembourg, Luxembourg
Alvaro de la Ossa Universidad de Costa Rica, Costa Rica
Cristian Mateos Diaz ISISTAN-CONICET, Universidad Nacional
del Centro, Argentina
VIII Organization
Gilberto Diaz Universidad Industrial de Santander, Colombia
Mario Jose Diván Universidad Nacional de La Pampa, Argentina
Bernabe Dorronsoro Universidad de Cadiz, Spain
Ernesto Dufrechou Universidad de la República, Uruguay
Nicolás Erdödy Open Parallel, New Zealand
Eduardo Fernandez Universidad de la República, Uruguay
Ezequiel Ferrero Department of Physics and Center for Complexity
and Biosystems, Italy
Alejandro Flores-Méndez CINVESTAV, Mexico
Emilio Francesquini University of Campinas, Brazil
Joao Gazolla Universidade Federal Fluminense, Brazil
Veronica Gil-Costa Universidad Nacional San Luis, Argentina
Isidoro Gitler ABACUS-CINVESTAV, Mexico
Brice Goglin Inria, France
Leo Gonzalez Universidad Politecnica de Madrid, Spain
José Luis Gordillo Universidad Nacional Autónoma de México, México
Jesus Cruz Guzman Universidad Nacional Autónoma de México, México
Elisa Heymann Universitat Autònoma de Barcelona, Spain
Javier Iparraguirre Universidad Tecnológica Nacional, Argentina
Santiago Iturriaga Universidad de la República, Uruguay
Salma Jalife Corporación Universitaria para el Desarrollo
de Internet A.C., Mexico
Roberto Leon Universidad Andres Bello, Chile
Francisco Luna Universidad de Málaga, Spain
Renzo Massobrio Universidad de la República, Uruguay
Rafael Mayo-Garcia Centro de Investigaciones Energéticas,
Medioambientales y Tecnológicas, Spain
Ricardo Medel Ascentio Technologies S.A., Argentina
Esteban Meneses Costa Rica National High Technology Center,
Costa Rica
Renato Miceli CENAI-CIMATEC, Brazil
Barton Miller University of Wisconsin-Madison, USA
Esteban Mocskos CSC-CONICET and Universidad de Buenos Aires,
Argentina
Philippe Navaux Universidade Federal de Rio Grande do Sul, Brazil
Sergio Nesmachnow Universidad de la República, Uruguay
Carla Osthoff National Laboratory for Scientific Computing, Brazil
Alejandro Otero Universidad de Buenos Aires and CSC-CONICET,
Argentina
Horacio Paggi Universidad Politécnica de Madrid, Spain
Jairo Panetta Instituto Tecnológico de Aeronáutica, Brazil
Claudio J. Paz UTN FRC, Argentina
Martín Pedemonte Universidad de la República, Uruguay
Tomas Perez-Acle Universidad de Chile, Chile
Laercio Lima Pilla Universidade Federal de Santa Catarina, Brazil
Javier Principe Universidad Politecnica de Cataluña - CIMNE, Spain
Organization IX
Juan Manuel Ramírez Universidad de Colima, Mexico
Markus Rampp Max Planck Computing and Data Facility, Germany
Vinod Rebello Universidade Federal Fluminense, Brazil
Genghis Ríos Pontificia Universidad Católica del Perú, Perú
Pablo Rodríguez-Bocca Universidad de la República, Uruguay
Isaac Rudomin Barcelona Supercomputing Center, Spain
Afonso Sales Pontificia Universidad Católica do Rio Grande do Sul,
Brazil
Carlos Sarraute Grandata Labs, Argentina
Lucas Mello Schnorr Universidade Federal do Rio Grande do Sul, Brazil
Hermes Senger Universidade Federal de São Carlos, Brazil
Alejandro Soba Comisión Nacional de Energía Atómica, Argentina
Roberto Souto Laboratório Nacional de Computação, Brazil
Luiz Angelo Steffenel Université de Reims Champagne-Ardenne, France
Mario Storti Universidad Nacional del Litoral and
CIMEC-CONICET, Argentina
Claude Tadonki MINES ParisTech, PSL, France
Gonzalo Tancredi Universidad de la República, Uruguay
Andrei Tchernykh Centro de Investigación Científica y de Educación
Superior de Ensenada, Mexico
Jamal Toutouh Universidad de Málaga, Spain
Tram Truong-Huu National University of Singapore, Singapore
Manuel Ujaldón Universidad de Málaga, Spain
Gabriel Usera Universidad de la República, Uruguay
Mariano Vazquez Barcelona Supercomputing Center, Spain
Jesus Verduzco Instituto Tecnológico de Colima, México
Pablo Javier Vidal Universidad de la Patagonia Austral, Argentina
Nicolás Wolovick Universidad Nacional de Córdoba, Argentina
Jesús Xamán Centro Nacional de Investigación y Desarrollo
Tecnológico, México
Alejandro Zunino ISISTAN-CONICET, Argentina
Contents
HPC Infrastructures and Datacenters
A Deep Learning Mapper (DLM) for Scheduling
on Heterogeneous Systems. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3
Daniel Nemirovsky, Tugberk Arkose, Nikola Markovic,
Mario Nemirovsky, Osman Unsal, Adrian Cristal, and Mateo Valero
Power Consumption Characterization of Synthetic Benchmarks
in Multicores . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 21
Jonathan Muraña, Sergio Nesmachnow, Santiago Iturriaga,
and Andrei Tchernykh
Initial Experiences from TUPAC Supercomputer. . . . . . . . . . . . . . . . . . . . . 38
David Vinazza, Alejandro Otero, Alejandro Soba,
and Esteban Mocskos
HPC Industry and Education
romeoLAB: A High Performance Training Platform for HPC, GPU
and DeepLearning. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 55
Arnaud Renard, Jean-Matthieu Etancelin, and Michael Krajecki
GPU, Multicores, Accelerators
Analysis and Characterization of GPU Benchmarks
for Kernel Concurrency Efficiency . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 71
Pablo Carvalho, Lúcia M. A. Drummond, Cristiana Bentes,
Esteban Clua, Edson Cataldo, and Leandro A. J. Marzulo
Parallel Batch Self-Organizing Map on Graphics Processing
Unit Using CUDA . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 87
Habib Daneshpajouh, Pierre Delisle, Jean-Charles Boisson,
Michael Krajecki, and Nordin Zakaria
Performance Prediction of Acoustic Wave Numerical Kernel
on Intel Xeon Phi Processor. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 101
Víctor Martínez, Matheus Serpa, Fabrice Dupros, Edson L. Padoin,
and Philippe Navaux