Biomineralization: From Molecular and Nano-structural Analyses to Environmental Science

392 Pages·2018·21.45 MB·English

by  Kazuyoshi Endo

Kazuyoshi Endo · Toshihiro Kogure 
Hiromichi Nagasawa E ditors
Biomineralization
From Molecular and Nano-structural
Analyses to Environmental Science
Biomineralization
The 14th International Symposium on Biomineralization was held during October 9–13, 2017, at
Tsukuba International Congress Center in Tsukuba, Japan
Kazuyoshi Endo • Toshihiro Kogure
Hiromichi Nagasawa
Editors
Biomineralization
From Molecular and Nano-structural
Analyses to Environmental Science
Editors
Kazuyoshi Endo Toshihiro Kogure
Department of Earth and Planetary Science Department of Earth and Planetary Science
The University of Tokyo Graduate School The University of Tokyo Graduate School
of Science of Science
Tokyo, Japan Tokyo, Japan
Hiromichi Nagasawa
Department of Applied Biological Chemistry
Graduate School of Agricultural and Life
Sciences
The University of Tokyo
Tokyo, Japan
ISBN 978-981-13-1001-0 ISBN 978-981-13-1002-7 (eBook)
https://doi.org/10.1007/978-981-13-1002-7
Library of Congress Control Number: 2018952998
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Preface
Biomineralization is a process by which organisms form mineral-like inorganic sub-
stances inside or outside their bodies. Biominerals are diverse in terms of structure,
composition, morphology and role, depending on organisms. The research area of
biomineralization is really interdisciplinary in methodology, ranging from micro-
scopic observation to molecular biology. It includes not only basic researches
mainly focusing on the mechanisms and evolutionary processes of biomineral for-
mation but also applied researches including medical, dental, agricultural, environ-
mental and materials sciences. Therefore, the society of biomineralization research
constitutes a group of researchers with a variety of background. It is a good stimula-
tion for us to get together and exchange ideas for new developments.
The International Symposium on Biomineralization began in 1970 and was held
irregularly up to the 10th symposium but thereafter regularly every 2 years. This
volume was planned as a record for the proceedings of the 14th International
Symposium on Biomineralization (BIOMIN XIV): From Molecular and Nano-
structural Analyses to Environmental Science. The symposium was held during
October 9–13, 2017, at Tsukuba International Congress Center in Tsukuba, Japan.
A total of 210 participants, including four accompanying persons, from 18 countries
and areas attended this symposium. The participants included 157 regular research-
ers and 49 students, who contributed to the 106 oral presentations, including 10
keynote lectures, and 84 poster presentations. The presentations were classified into
the following 8 topics:
1. Structure and analysis of biominerals
2. Molecular and cellular regulation of biomineralization
3. Genome-based analysis of biomineralization
4. Evolution in biomineralization
5. Biomineralization in medical and dental sciences
6. Bio-inspired materials science and engineering
7. Biominerals for environmental and paleoenvironmental sciences
8. Mollusk shell formation
v
vi Preface
This volume consists of 42 articles which are arranged in the order of the above
topics. Most of them are original articles, and a few are reviews. The contributors
were those who chose to submit their manuscript. All articles were peer-reviewed.
Although the volume does not necessarily represent the whole contents of the sym-
posium, it contains articles from all 8 topics. Thus, we are able to understand the
present status of the cutting-edge of various aspects in biomineralization research
from this volume. The volume has an appendix, which comprises valuable SEM and
TEM images taken and left unpublished by late Dr. Hiroshi Nakahara, a distin-
guished researcher majoring in electron microscopy of biominerals. This appendix
was arranged by Dr. Mitsuo Kakei, who selected the photographs from about 160
slides, which were shown on the screen during the lunch times in the symposium.
The symposium and the publication of this volume were supported by a number
of Japanese scientific societies, to which we extend our gratitude. We express our
sincere thanks to the Naito Foundation, Tokyo Ouka Foundation for the Promotion
of Science and Technology, Kato Memorial Bioscience Foundation, Inoue
Foundation for Science, Suntory Foundation for Life Sciences, Life Science
Foundation of Japan, Tsukuba Tourism and Convention Association, and Tsukuba
City for their financial support. Thanks are also due to Japanese Fossil Museum,
Kouchiken Nihonkei Hozonkai, K.  MIKIMOTO & Co. Ltd., Mikimoto
Pharmaceutical Co., Ltd., Kao Corporation, LOTTE Co., Ltd., and Kotegawa
Sangyo Co., Ltd., for their kind donations.
Tokyo Japan Kazuyoshi Endo
A pril, 2018 Toshihiro Kogure
Hiromichi Nagasawa
Contents
Part I Structure and Analysis of Biominerals
1 On the Transition Temperature to Calcite and Cell Lengths
for Various Biogenic Aragonites . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3
Taiga Okumura, Masahiro Yoshimura, and Toshihiro Kogure
2 TEM Study of the Radular Teeth of the Chiton
Acanthopleura japonica . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 11
Mitsuo Kakei, Masayoshi Yoshikawa, and Hiroyuki Mishima
3 Experimental Cremation of Bone: Crystallite Size and Lattice
Parameter Evolution . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 21
Martina Greiner, Balazs Kocsis, Mario F. Heinig, Katrin Mayer,
Anita Toncala, Gisela Grupe, and Wolfgang W. Schmahl
4 Effect of Carbonic Anhydrase Immobilized on Eggshell
Membranes on Calcium Carbonate Crystallization In Vitro . . . . . . . 31
M. Soledad Fernández, Betzabe Montt, Liliana Ortiz,
Andrónico Neira- Carrillo, and José Luis Arias
5 Proteomic Analysis of Venomous Fang Matrix Proteins
of Protobothrops flavoviridis (Habu) Snake . . . . . . . . . . . . . . . . . . . . . . 39
Tomohisa Ogawa, Asa Sekikawa, Hajime Sato, Koji Muramoto,
Hiroki Shibata, and Shosaku Hattori
6 Characterization of Goldfish Scales by Vibrational
Spectroscopic Analyses . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 55
Masayuki Nara, Yusuke Maruyama, and Atsuhiko Hattori
7 Relationship Between Bone Morphology and Bone Quality
in Female Femurs: Implication for Additive Risk of Alternative
Forced Molting . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 63
Natsuko Ishikawa, Chihiro Nishii, Koh-en Yamauchi,
Hiroyuki Mishima, and Yoshiki Matsumoto
vii
viii Contents
8 Spectroscopic Investigation of Shell Pigments from the Family
Neritidae (Mollusca: Gastropoda) . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 73
Toshiyuki Komura, Hiroyuki Kagi, Makiko Ishikawa, Mana Yasui,
and Takenori Sasaki
9 3D Visualization of Calcified and Non-calcified Molluscan
Tissues Using Computed Tomography . . . . . . . . . . . . . . . . . . . . . . . . . 83
Takenori Sasaki, Yu Maekawa, Yusuke Takeda, Maki Atsushiba,
Chong Chen, Koji Noshita, Kentaro Uesugi, and Masato Hoshino
Part II M olecular and Cellular Regulation of Biomineralization
10 Calcium Ion and Mineral Pathways in Biomineralization:
A Perspective . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 97
Gal Mor Khalifa, Keren Kahil, Lia Addadi, and Steve Weiner
11 Identification of Barnacle Shell Proteins by Transcriptome
and Proteomic Approaches . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 105
Yue Him Wong, Noriaki Ozaki, Wei-Pang Zhang, Jin Sun,
Erina Yoshimura, Mieko Oguro-Okano, Yasuyuki Nogata,
Hsiu-Chin Lin, Benny K. K. Chan, Pei-Yuan Qian, and Keiju Okano
12 The Optical Characteristics of Cultured Akoya Pearl
Are Influenced by Both Donor and Recipient Oysters . . . . . . . . . . . . 113
Toshiharu Iwai, Masaharu Takahashi, Chiemi Miura,
and Takeshi Miura
13 Influence of B Vitamins on Proliferation and Differentiation
of Osteoblastic Bovine Cell Cultures: An In Vitro Study . . . . . . . . . . 121
Kent Urban, Julia Auer, Sebastian Bürklein, and Ulrich Plate
14 Rice Plant Biomineralization: Electron Microscopic Study
on Plant Opals and Exploration of Organic Matrices
Involved in Biosilica Formation . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 129
Noriaki Ozaki, Takuya Ishida, Akiyoshi Osawa, Yumi Sasaki,
Hiromi Sato, Michio Suzuki, Keiju Okano, and Yuko Yoshizawa
15 DMP1 Binds Specifically to Type I Collagen and Regulates
Mineral Nucleation and Growth . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 137
Anne George, Elizabeth Guirado, and Yinghua Chen
16 Exploration of Genes Associated with Sponge Silicon
Biomineralization in the Whole Genome Sequence
of the Hexactinellid Euplectella curvistellata . . . . . . . . . . . . . . . . . . . . 147
Katsuhiko Shimizu, Hiroki Kobayashi, Michika Nishi,
Masatoshi Tsukahara, Tomohiro Bito, and Jiro Arima
Contents ix
Part III Genome-Based Analysis of Biomineralization
17 The Origin and Early Evolution of SCPP Genes and Tissue
Mineralization in Vertebrates . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 157
Kazuhiko Kawasaki
Part IV Evolution in Biomineralization
18 Immunolocalization of Enamel Matrix Protein-Like Proteins
in the Tooth Enameloid of Actinopterygian Bony Fish . . . . . . . . . . . . 167
Ichiro Sasagawa, Shunya Oka, Masato Mikami, Hiroyuki Yokosuka,
and Mikio Ishiyama
19 Geographical and Seasonal Variations of the Shell
Microstructures in the Bivalve Scapharca broughtonii . . . . . . . . . . . . 177
Kozue Nishida and Takenori Sasaki
Part V Biomineralization in Medical and Dental Sciences
20 Enhancement of Bone Tissue Repair by Octacalcium Phosphate
Crystallizing into Hydroxyapatite In Situ . . . . . . . . . . . . . . . . . . . . . . 189
Osamu Suzuki and Takahisa Anada
21 The Relationship Between the Structure and Calcification
of Dentin and the Role of Melatonin . . . . . . . . . . . . . . . . . . . . . . . . . . . 199
Hiroyuki Mishima, Saki Tanabe, Atsuhiko Hattori, Nobuo Suzuki,
Mitsuo Kakei, Takashi Matsumoto, Mika Ikegame, Yasuo Miake,
Natsuko Ishikawa, and Yoshiki Matsumoto
22 Fabrication of Hydroxyapatite Nanofibers with High Aspect
Ratio via Low-Temperature Wet Precipitation Methods Under
Acidic Conditions . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 211
Masahiro Okada, Emilio Satoshi Hara, and Takuya Matsumoto
23 Physico-chemical Characterisation of the Processes Involved
in Enamel Remineralisation by CPP-ACP . . . . . . . . . . . . . . . . . . . . . . 219
Keith J. Cross, N. Laila Huq, Boon Loh, Li-Ming Bhutta,
Bill Madytianos, Sarah Peterson, David P. Stanton, Yi Yuan,
Coralie Reynolds, Glen Walker, Peiyan Shen, and Eric C. Reynolds
24 Molecular Interactions of Peptide Encapsulated Calcium
Phosphate Delivery Vehicle at Enamel Surfaces . . . . . . . . . . . . . . . . . 229
Noorjahan Laila Huq, Keith John Cross, Helen Myroforidis,
David Phillip Stanton, Yu-Yen Chen, Brent Robert Ward,
and Eric Charles Reynolds
25 Preparation of Random and Aligned Polycaprolactone Fiber
as Template for Classical Calcium Oxalate Through
Electrocrystallization . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 241
Lazy Farias, Nicole Butto, and Andrónico Neira-Carrillo