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P1:SFK/UKS P2:SFK/UKS QC:SFK/UKS T1:SFK fm BLBS070-Stewart October6,2010 10:25 Trim:244mmX172mm PrinterName:YettoCome Plant Transformation Technologies Plant Transformation Technologies Edited by C. Neal Stewart, Alisher Touraev, Vitaly Citovsky and Tzvi Tzfira © 2011 Blackwell Publishing Ltd. ISBN: 978-0-813-82195-5 P1:SFK/UKS P2:SFK/UKS QC:SFK/UKS T1:SFK fm BLBS070-Stewart October6,2010 10:25 Trim:244mmX172mm PrinterName:YettoCome Plant Transformation Technologies Editors C. NEAL STEWART, Jr. DepartmentofPlantSciences UniversityofTennessee Knoxville,TN,USA ALISHER TOURAEV MaxF.PerutzLaboratories UniversityDepartmentsattheViennaBiocenter Vienna,Austria VITALY CITOVSKY DepartmentofBiochemistryandCellBiology StateUniversityofNewYork StonyBrook,NY,USA TZVI TZFIRA DepartmentofCellular,MolecularandDevelopmentalBiology UniversityofMichigan AnnArbor,MI,USA A John Wiley & Sons, Ltd., Publication Plant Transformation Technologies P1:SFK/UKS P2:SFK/UKS QC:SFK/UKS T1:SFK fm BLBS070-Stewart October6,2010 10:25 Trim:244mmX172mm PrinterName:YettoCome Thiseditionfirstpublished2011(cid:1)C 2011byBlackwellPublishingLtd. BlackwellPublishingwasacquiredbyJohnWiley&SonsinFebruary2007.Blackwell’spublishingprogramhas beenmergedwithWiley’sglobalScientific,Technical,andMedicalbusinesstoformWiley-Blackwell. Registeredoffice: JohnWiley&SonsLtd,TheAtrium,SouthernGate,Chichester,WestSussex,PO198SQ,UK Editorialoffices: 2121StateAvenue,Ames,Iowa50014-8300,USA TheAtrium,SouthernGate,Chichester,WestSussex,PO198SQ,UK 9600GarsingtonRoad,Oxford,OX42DQ,UK Fordetailsofourglobaleditorialoffices,forcustomerservicesandforinformationabouthowtoapplyfor permissiontoreusethecopyrightmaterialinthisbookpleaseseeourwebsiteatwww.wiley.com/wiley-blackwell. Authorizationtophotocopyitemsforinternalorpersonaluse,ortheinternalorpersonaluseofspecificclients,is grantedbyBlackwellPublishing,providedthatthebasefeeispaiddirectlytotheCopyrightClearanceCenter,222 RosewoodDrive,Danvers,MA01923.ForthoseorganizationsthathavebeengrantedaphotocopylicensebyCCC, aseparatesystemofpaymentshasbeenarranged.ThefeecodesforusersoftheTransactionalReportingServiceare ISBN-13:978-0-8138-2195-5/2011. Designationsusedbycompaniestodistinguishtheirproductsareoftenclaimedastrademarks.Allbrandnamesand productnamesusedinthisbookaretradenames,servicemarks,trademarksorregisteredtrademarksoftheir respectiveowners.Thepublisherisnotassociatedwithanyproductorvendormentionedinthisbook.This publicationisdesignedtoprovideaccurateandauthoritativeinformationinregardtothesubjectmattercovered.Itis soldontheunderstandingthatthepublisherisnotengagedinrenderingprofessionalservices.Ifprofessionaladvice orotherexpertassistanceisrequired,theservicesofacompetentprofessionalshouldbesought. LibraryofCongressCataloging-in-PublicationData Planttransformationtechnologies/editors,C.NealStewartJr....[etal.]. p.;cm. Includesbibliographicalreferencesandindex. ISBN978-0-8138-2195-5(pbk.:alk.paper) 1.Plantgeneticengineering. 2.Genetictransformation. 3.Genomics–Methods. 4.Transgenicplants. I.StewartJr.,C.Neal. [DNLM:1.Plants,GeneticallyModified. 2.Genes,Plant. 3.GeneticEngineering. 4.Transformation, Genetic. SB123.57] QK981.5.P5862011 660.6(cid:2)5–dc22 2010028091 AcataloguerecordforthisbookisavailablefromtheBritishLibrary. Thisbookispublishedinthefollowingelectronicformats:ePDF9780470958872;WileyOnlineLibrary 9780470958988;ePub9780470958940 Setin10.5/12ptTimesbyAptara(cid:1)R Inc.,NewDelhi,India 1 2011 P1:SFK/UKS P2:SFK/UKS QC:SFK/UKS T1:SFK fm BLBS070-Stewart October6,2010 10:25 Trim:244mmX172mm PrinterName:YettoCome Contents Contributors vii Preface xiii SECTION1 Agrobacterium-MediatedTransformation Chapter1 HostFactorsInvolvedinGeneticTransformationofPlantCellsby Agrobacterium 3 BENOˆITLACROIX,ADIZALTSMAN,ANDVITALYCITOVSKY Chapter2 GenomicsofAgrobacterium–PlantInteraction:AnApproachtoRefine thePlantTransformationTechnology 31 AJITHANAND,ZARIRE.VAGHCHHIPAWALA,AND KIRANKUMARS.MYSORE SECTION2 OtherTransformationTechnologies Chapter3 ParticleBombardment:AnEstablishedWeaponintheArsenalof PlantBiotechnologists 53 THEODOREM.KLEIN Chapter4 ANovelGeneDeliverySysteminPlantswithCalciumAlginate Micro-Beads 73 NAOKIWADA,SHIN’ICHIROKAJIYAMA, NARUEMONKHEMKLADNGOEN,ANDKIICHIFUKUI Chapter5 PollenTransformationTechnologies 83 TATIANARESCHANDALISHERTOURAEV Chapter6 IntragenicVectorsandMarker-FreeTransformation:Toolsfora GreenerBiotechnology 93 CAIUSM.ROMMENS,ANTHONYCONNER,HUAYAN,AND ZACHANLEY Chapter7 VisualizingTransgeneExpression 109 JOHNJ.FINER v P1:SFK/UKS P2:SFK/UKS QC:SFK/UKS T1:SFK fm BLBS070-Stewart October6,2010 10:25 Trim:244mmX172mm PrinterName:YettoCome vi CONTENTS SECTION3 Vectors,Promoters,andOtherToolsforPlantTransformation Chapter8 CurrentStateandPerspectiveofBinaryVectorsandSuperbinary Vectors 123 TOSHIYUKIKOMORIANDTOSHIHIKOKOMARI Chapter9 NovelDualBinaryVectors(pCLEAN)forPlantTransformation 139 PHILIPPEVAIN Chapter10 pOREModularVectorsforPlantTransformation 149 DWAYNED.HEGEDUS Chapter11 pANIC:AVersatileSetofGateway-CompatibleVectorsforGene OverexpressionandRNAi-MediatedDown-RegulationinMonocots 161 DAVIDG.J.MANN,PETERR.LAFAYETTE,LAURAL.ABERCROMBIE, WAYNEA.PARROTT,ANDC.NEALSTEWART,JR. SECTION4 TransgeneIntegration,Stability,Methylation,Silencing Chapter12 UnderstandingandAvoidingTransgeneSilencing 171 MICHAELW.GRAHAM,STEPHENR.MUDGE,PETERR.STERNES, ANDROBERTG.BIRCH Chapter13 Site-SpecificRecombinationforPreciseand“Clean”Transgene IntegrationinPlantGenome 197 VIBHASRIVASTAVAANDDAVIDW.OW SECTION5 SelectionSystems,Marker-FreeTransformation Chapter14 SelectableMarkerGenes:TypesandInteractions 213 BRIANMIKI,ASHRAFABDEEN,YUZUKIMANABE, SOUADELOUAKFAOUI,DOUGLASA.JOHNSON, LORETAGUDYNAITE-SAVITCH,MINGHU,ANDPHILMACDONALD Chapter15 TransformationMethodsforObtainingMarker-FreeGenetically ModifiedPlants 229 JANG.SCHAART,FRANSA.KRENS,ANNE-MARIEA.WOLTERS, ANDRICHARDG.F.VISSER Chapter16 IntellectualPropertyAspectsofPlantTransformation 243 JIMM.DUNWELL Index 271 ColorPlatebetweenpages82and83 P1:SFK/UKS P2:SFK/UKS QC:SFK/UKS T1:SFK fm BLBS070-Stewart October6,2010 10:25 Trim:244mmX172mm PrinterName:YettoCome Contributors AshrafAbdeen EasternCerealsandOilseedsResearchCentre AgricultureandAgri-FoodCanada Ottawa,Ontario,Canada LauraL.Abercrombie DepartmentofPlantSciences UniversityofTennessee Knoxville,TN,USA AjithAnand DuPont/PioneerCropGeneticsResearch Johnston,IA,USA RobertG.Birch BotanyDepartment,BIOL TheUniversityofQueensland Brisbane,Australia VitalyCitovsky DepartmentofBiochemistryandCellBiology StateUniversityofNewYork StonyBrook,NY,USA AnthonyConner NewZealandInstituteforCrop&FoodResearch Christchurch,NewZealand JimM.Dunwell SchoolofBiologicalSciences UniversityofReading,UK JohnJ.Finer DepartmentofHorticultureandCropScience PlantMolecularBiologyandBiotechnology OARDC/TheOhioStateUniversity Wooster,OH,USA KiichiFukui DepartmentofBiotechnology GraduateSchoolofEngineering OsakaUniversity Osaka,Japan vii P1:SFK/UKS P2:SFK/UKS QC:SFK/UKS T1:SFK fm BLBS070-Stewart October6,2010 10:25 Trim:244mmX172mm PrinterName:YettoCome viii CONTRIBUTORS MichaelW.Graham BotanyDepartment,BIOL TheUniversityofQueensland Brisbane,Australia LoretaGudynaite-Savitch IogenCorp. Ottawa,Ontario,Canada ZacHanley PastoralGenomics ViaLactiaBiosciences Newmarket,Auckland,NewZealand DwayneD.Hegedus AgricultureandAgri-FoodCanada Saskatoon,SK,Canada MingHu EasternCerealsandOilseedsResearchCentre AgricultureandAgri-FoodCanada Ottawa,Ontario,Canada DouglasA.Johnson DepartmentofBiology UniversityofOttawa Ottawa,Ontario,Canada Shin’ichiroKajiyama DepartmentofBiotechnology GraduateSchoolofEngineering OsakaUniversity Osaka,Japan NaruemonKhemkladngoen DepartmentofBiotechnology GraduateSchoolofEngineering OsakaUniversity Osaka,Japan TheodoreM.Klein DuPontAgriculturalBiotechnology DuPontExperimentalStation Wilmington,DE,USA ToshihikoKomari PlantInnovationCenter JapanTobaccoInc. Shizuoka,Japan ToshiyukiKomori PlantInnovationCenter JapanTobaccoInc. Shizuoka,Japan FransA.Krens WageningenURPlantBreeding Wageningen,TheNetherlands P1:SFK/UKS P2:SFK/UKS QC:SFK/UKS T1:SFK fm BLBS070-Stewart October6,2010 10:25 Trim:244mmX172mm PrinterName:YettoCome CONTRIBUTORS ix BenoˆıtLacroix DepartmentofBiochemistryandCellBiology StateUniversityofNewYork StonyBrook,NY,USA PeterR.LaFayette DepartmentofCropandSoilSciences UniversityofGeorgia Athens,GA,USA PhilMacDonald BiotechnologyEnvironmentalReleaseAssessments CanadianFoodInspectionAgency Ottawa,Ontario,Canada YuzukiManabe EasternCerealsandOilseedsResearchCentre AgricultureandAgri-FoodCanada Ottawa,Ontario,Canada DavidG.J.Mann DepartmentofPlantSciences UniversityofTennessee Knoxville,TN,USA BrianMiki EasternCerealsandOilseedsResearchCentre AgricultureandAgri-FoodCanada Ottawa,Ontario,Canada StephenR.Mudge BotanyDepartment,BIOL TheUniversityofQueensland Brisbane,Australia KirankumarS.Mysore PlantBiologyDivision TheSamuelRobertsNobleFoundation 2510SamNoblePkwy Ardmore,OK,USA SouadElOuakfaoui NewSubstancesProgram BiotechnologySection ScienceandRiskAssessmentDirectorate ScienceandTechnologyBranch EnvironmentCanada Gatineau,Que´bec,Canada DavidW.Ow SouthChinaBotanicalGarden ChineseAcademyofSciences Guangzhou,China WayneA.Parrott DepartmentofCropandSoilSciences UniversityofGeorgia Athens,GA,USA P1:SFK/UKS P2:SFK/UKS QC:SFK/UKS T1:SFK fm BLBS070-Stewart October6,2010 10:25 Trim:244mmX172mm PrinterName:YettoCome x CONTRIBUTORS TatianaResch MaxF.PerutzLaboratories UniversityDepartmentsattheViennaBiocenter Vienna,Austria CaiusM.Rommens J.R.SimplotCompany SimplotPlantSciences Boise,ID,USA JanG.Schaart WageningenURPlantBreeding Wageningen,TheNetherlands VibhaSrivastava DepartmentofCrop,Soil&EnvironmentalSciences, andDepartmentofHorticulture UniversityofArkansas Fayetteville,AR,USA PeterR.Sternes BotanyDepartment,BIOL TheUniversityofQueensland Brisbane,Australia C.NealStewart,Jr. DepartmentofPlantSciences UniversityofTennessee Knoxville,TN,USA AlisherTouraev MaxF.PerutzLaboratories UniversityDepartmentsattheViennaBiocenter Vienna,Austria ZarirE.Vaghchhipawala MonsantoCompany Middleton,WI,USA PhilippeVain JohnInnesCentre DepartmentofCropGenetics NorwichResearchPark Norwich,UnitedKingdom RichardG.F.Visser WageningenURPlantBreeding Wageningen,TheNetherlands NaokiWada DepartmentofBiotechnology GraduateSchoolofEngineering OsakaUniversity Osaka,Japan Anne-MarieA.Wolters WageningenURPlantBreeding Wageningen,TheNetherlands P1:SFK/UKS P2:SFK/UKS QC:SFK/UKS T1:SFK fm BLBS070-Stewart October6,2010 10:25 Trim:244mmX172mm PrinterName:YettoCome CONTRIBUTORS xi HuaYan J.R.SimplotCompany SimplotPlantSciences Boise,ID,USA AdiZaltsman DepartmentofBiochemistryandCellBiology StateUniversityofNewYork StonyBrook,NY,USA

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