Biotechnology and Plant Disease Management (Cabi Publishing)

590 Pages·2007·3.625 MB·English

by  Z K Punja, S De Boer, H I Sanfacon

B P D M
IOTECHNOLOGY AND LANT ISEASE ANAGEMENT
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B P
IOTECHNOLOGY AND LANT
D M
ISEASE ANAGEMENT
Edited by
Z.K. Punja
Simon Fraser University
Department of Biological Sciences
8888 University Drive
Burnaby, BC, V5A 1S6, Canada
S.H. De Boer
Charlottetown Laboratory
Canadian Food Inspection Agency
93 Mount Edward Road
Charlottetown, PEI, C1A 5T1, Canada
and
H. Sanfaçon
Pacifi c Agri-Food Research Centre
Agriculture and Agri-Food Canada
4200 Highway 97, Summerland,
BC, V0H 1Z0, Canada
CABI is a trading name of CAB International
CABI Head Office CABI North American Office
Nosworthy Way 875 Massachusetts Avenue
Wallingford 7th Floor
Oxfordshire OX10 8DE Cambridge, MA 02139
UK USA
Tel: [phone] Tel: [phone]
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E-mail: [email protected] E-mail: [email protected]
Website: www.cabi.org
©CAB International 2007 (except Chapters 4 and 23: ©Minister of Public
Works and Government Services Canada 2007; Chapter 7: ©Her Majesty the
Queen in Right of Canada, as represented by the Minister of Agriculture
and Agri-Food Canada 2007; Chapter 8: ©Her Majesty the Queen in Right
of Canada [Canadian Food Inspection Agency] 2007). All rights reserved.
No part of this publication may be reproduced in any form or by any
means, electronically, mechanically, by photocopying, recording or
otherwise, without the prior permission of the copyright owners.
A catalogue record for this book is available from the British Library,
London, UK.
Library of Congress Cataloging-in-Publication Data
Biotechnology and plant disease management/edited by Zamir K. Punja,
Solke De Boer, and Hélène Sanfaçon.
p. cm.
Includes bibliographical references and index.
ISBN 978-1-84593-288-6 (alk. paper) – ISBN 978-1-84593-310-4 (ebook) 1.
Plant biotechnology. 2. Plant diseases. I. Punja, Zamir K. II. De Boer, S.(S. H.)
III. Sanfaçon, Hélène. IV. Title.
SB106.B56B553 2008
632'.3--dc22 2007017180
ISBN-13: 978 1 84593 288 6
Typeset by SPi India Pvt Ltd, Pondicherry, India.
Printed and bound in the UK by Biddles Ltd, King’s Lynn.
Contents
Contributors ix
SECTION A: UNRAVELINGMICROBE–PLANTINTERACTIONSFOR
APPLICATIONSTODISEASEMANAGEMENT
1 Signal Transduction Pathways and Disease Resistant 1
Genes and Their Applications to Fungal Disease Control
T. Xing
2 Modulating Quorum Sensing and Type III Secretion Systems 16
in Bacterial Plant Pathogens for Disease Management
C.-H. Yang and S. Yang
3 Application of Biotechnology to Understand Pathogenesis 58
in Nematode Plant Pathogens
M.G. Mitchum, R.S. Hussey, E.L. Davis and T.J. Baum
4 Interactions Between Plant and Virus Proteomes in 87
Susceptible Hosts: Identification of New Targets for Antiviral
Strategies
H. Sanfaçon and J. Jovel
5 Mechanisms of Plant Virus Evolution and Identification 109
of Genetic Bottlenecks: Impact on Disease Management
M.J. Roossinck and A. Ali
6 Molecular Understanding of Viroid Replication Cycles 125
and Identification of Targets for Disease Management
R.A. Owens
v
vi Contents
SECTION B: MOLECULARDIAGNOSTICSOFPLANTPATHOGENSFOR
DISEASEMANAGEMENT
7 Molecular Diagnostics of Soilborne Fungal Pathogens 146
C.A. Lévesque
8 Molecular Detection Strategies for Phytopathogenic Bacteria 165
S.H. De Boer, J.G. Elphinstone and G.S. Saddler
9 Molecular Diagnostics of Plant-parasitic Nematodes 195
R.N. Perry, S.A. Subbotin and M. Moens
10 Molecular Diagnostic Methods for Plant Viruses 227
A. Olmos, N. Capote, E. Bertolini and M. Cambra
11 Molecular Identification and Diversity of Phytoplasmas 250
G. Firrao, L. Conci and R. Locci
12 Molecular Detection of Plant Viroids 277
R.P. Singh
SECTION C: ENHANCINGRESISTANCEOFPLANTSTOPATHOGENSFOR
DISEASEMANAGEMENT
13 Application of Cationic Antimicrobial Peptides 301
for Management of Plant Diseases
S. Misra and A. Bhargava
14 Molecular Breeding Approaches for Enhanced Resistance 321
Against Fungal Pathogens
R.E. Knox and F.R. Clarke
15 Protein-mediated Resistance to Plant Viruses 358
J.F. Uhrig
16 Transgenic Virus Resistance Using Homology-dependent 374
RNA Silencing and the Impact of Mixed Virus Infections
M. Ravelonandro
17 Molecular Characterization of Endogenous Plant 395
Virus Resistance Genes
F.C. Lanfermeijer and J. Hille
18 Potential for Recombination and Creation of New Viruses 416
in Transgenic Plants Expressing Viral Genes: Real or
Perceived Risk?
M. Fuchs
19 Virus-resistant Transgenic Papaya: Commercial Development 436
and Regulatory and Environmental Issues
J.Y. Suzuki, S. Tripathi and D. Gonsalves
Contents vii
SECTION D: UNDERSTANDINGMICROBIALINTERACTIONSTOENHANCE
DISEASEMANAGEMENT
20 Potential Disease Control Strategies Revealed by Genome 462
Sequencing and Functional Genetics of Plant Pathogenic
Bacteria
A.O. Charkowski
21 Molecular Assessment of Soil Microbial Communities with 498
Potential for Plant Disease Suppression
J.D. van Elsas and R. Costa
22 Enhancing Biological Control Efficacy of Yeasts to Control 518
Fungal Diseases Through Biotechnology
G. Marchand, G. Clément-Mathieu, B. Neveu and R.R. Bélanger
23 Molecular Insights into Plant Virus–Vector Interactions 532
D. Rochon
Index 569
Colour plates for Figs 3.1 and 3.2 may be found after page 64
Colour plates for Fig. 22.3 may be found after page 528
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Contributors
A. Ali,The Samuel Roberts Noble Foundation, P.O. Box 2180, Ardmore, OK 73402,
USA; Current address: Department of Biological Sciences, 600 South College
Avenue Tulsa, OK 74104–3189, USA
T.J. Baum, Department of Plant Pathology, Iowa State University, Ames, Iowa,
USA
R.R. Bélanger, Département de phytologie, Centre de recherche en horticulture,
Faculté des sciences de l’agriculture et de l’alimentation, Université Laval,
Québec, QC, G1K 7P4, Canada
E. Bertolini, Plant Protection and Biotechnology Centre, Instituto Valenciano de
Investigaciones Agrarias (IVIA), Carretera Moncada a Náquera km 5, 46113
Moncada, Valencia, Spain
A. Bhargava,Department of Biochemistry and Microbiology, University of Victoria,
Victoria, BC, V8N 3P6, Canada
M. Cambra, Plant Protection and Biotechnology Centre, Instituto Valenciano de
Investigaciones Agrarias (IVIA), Carretera Moncada a Náquera km 5, 46113
Moncada, Valencia, Spain
N. Capote, Plant Protection and Biotechnology Centre, Instituto Valenciano de
Investigaciones Agrarias (IVIA), Carretera Moncada a Náquera km 5, 46113
Moncada, Valencia, Spain
A.O. Charkowski, Department of Plant Pathology, University of Wisconsin-
Madison, 1630 Linden Drive, Madison, WI 53706, USA
F.R. Clarke, Agriculture and Agri-Food Canada, Semiarid Prairie Agricultural
Research Centre, Swift Current, SK, S9H 3X2, Canada
G. Clément-Mathieu, Département de phytologie, Centre de recherche en horti-
culture, Faculté des sciences de l’agriculture et de l’alimentation, Université
Laval, Québec, QC, G1K 7P4, Canada
L. Conci,Instituto de Fitopatología y Fisiología Vegetal-INTA, Camino 60 cuadras
km 5 1/2 (X5020ICA), Córdoba, Argentina
R. Costa,Department of Microbial Ecology, University of Groningen, Kerklaan 30,
9750RA Haren, The Netherlands
ix